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dcm2mnc -stdin fails #167

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moreje opened this issue Apr 12, 2024 · 1 comment

moreje commented Apr 12, 2024

Hello,
how can I have dcm2mnc scaning subfolders to find dicom files?
my data are in /SUBJECT/DICOM/SESS1/XXX/YYY

dcm2mnc -fname test /SUBJECT/DICOM/SESS1
can't find files tat are in YYY folder

I've tried:
ls -R /SUBJECT/DICOM/SESS1 | dcm2mnc -stdin -fname test ./

but it fails with "skipping file xxxx.dcm xhich is not in the expected format"

what am I doing wrong?
or is there another way?
Thank you

The text was updated successfully, but these errors were encountered:

moreje changed the title ~~dcm2mnc stdin~~ dcm2mnc -stdin fails

Author

moreje commented Apr 12, 2024

ok, i'm answering myself...
find do the job!

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