Pickle Support

Added support for pickling clusterer and dendrogram objects.

Fixed issues non-integer graph nodes sometimes returning empty clusters.

Python3 Support

Made the few touches required for both python 2 and 3 to be able to use the library.

Node Remap Fix

A small change to fix a node mapping issue where integer nodes were not clustering correctly.

Cythonization

Project is now compiled in Cython and has a cleaner interface.

More tests were added. More documentation was generated. Execution was sped up by ~20%.

Unique Flags

Improvements

• Added ability to pass a uniqueness flag that forces all quality scores between clusters with the
  flag to be 0.

Small Graph Fix

Small graphs of size 0 or 1 with or without orphan clusters now appropriately run and return clusters.

Allset and module name changes

v1.0.1

Bumped version to avoid conflict on 1.0.0

Initial Public Release

This repository has been used for agglomerative clustering in a variety of projects and tasks. There are still some graph structures it does not respond well to (see TODO list in README), but it handles many of the cases for which the base algorithm would fail including orphaned nodes.