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1. MMseqs2 MMseqs2 Public

   MMseqs2: ultra fast and sensitive search and clustering suite

   C 1.5k 202

2. hh-suite hh-suite Public

   Remote protein homology detection suite.

   C 552 136

3. WIsH WIsH Public

   Predict prokaryotic host for phage metagenomic sequences

   C++ 52 10

4. BaMMmotif2 BaMMmotif2 Public

   Bayesian Markov Model motif discovery tool version 2 - An expectation maximization algorithm for the de novo discovery of enriched motifs as modelled by higher-order Markov models.

   C++ 13 5

5. PEnG-motif PEnG-motif Public

   PEnG-motif is an open-source software package for searching statistically overrepresented motifs (position specific weight matrices, PWMs) in a set of DNA sequences.

   C++ 10 3

6. b-lore b-lore Public

   Bayesian multiple logistic regression for GWAS meta-analysis

   Python 16 1