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Add table statistics #1285

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Add table statistics #1285

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ndrluis
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@ndrluis ndrluis commented Nov 4, 2024

The Java expire snapshot process expires table statistics and partition statistics. I am implementing a statistics table to make our expire snapshot compatible with the Java implementation.

@ndrluis ndrluis changed the title Add table statistics update Add table statistics Nov 4, 2024
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ndrluis commented Nov 4, 2024

I plan to move the set/remove statistics methods from the Transaction class to another class, such as ManageSnapshot. In the meantime, I’d like to confirm with everyone if I’m heading in the right direction with the current implementation.

@Fokko @sungwy @kevinjqliu

@ndrluis ndrluis changed the title Add table statistics WIP: Add table statistics Nov 4, 2024
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Thanks for the PR! Added a few comments. I think it would also be helpful to include integration tests

pyiceberg/table/metadata.py Show resolved Hide resolved
statistics_path: str = Field(alias="statistics-path")
file_size_in_bytes: int = Field(alias="file-size-in-bytes")
file_footer_size_in_bytes: int = Field(alias="file-footer-size-in-bytes")
blob_metadata: List[BlobMetadata] = Field(alias="blob-metadata")
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The alter table builder.
"""
updates = (
RemoveStatisticsUpdate(
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do you mind linking the java implementation? do we want to remove all stats?

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I understand that we want to remove the statistics of a specific snapshot, and I understand that we have one statistics file per snapshot.

The equivalent code would be the SetStatistics class, which follows the same pattern as our ManageSnapshot class. This is the scenario I want to double-check to ensure we follow the same pattern.

if update.snapshot_id != update.statistics.snapshot_id:
raise ValueError("Snapshot id in statistics does not match the snapshot id in the update")

rest_statistics = [stat for stat in base_metadata.statistics if stat.snapshot_id != update.snapshot_id]
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nit: this can be a helper function to filter on snapshot_id

},
{
"snapshot-id": 3055729675574597004,
"statistics-path": "s3://a/b/stats.puffin",
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this does file need to exist on disk?

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No, there is no validation in place. This is only used for clients that support puffin files and for the expire snapshot procedure, which removes this information from the metadata. If the user wants, they can also remove the file as part of the expire snapshot procedure.

@ndrluis ndrluis force-pushed the add-statistics branch 2 times, most recently from 9b15c86 to d16ef47 Compare November 10, 2024 23:30
@ndrluis ndrluis requested a review from kevinjqliu November 10, 2024 23:42
@ndrluis ndrluis changed the title WIP: Add table statistics Add table statistics Nov 10, 2024
@ndrluis ndrluis marked this pull request as ready for review November 10, 2024 23:43
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ndrluis commented Nov 10, 2024

@kevinjqliu could you please review it once more?

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Added a few comments.

Do you know which engine currently can generate puffin files? would be great to add an integration with a spark generated puffin file

table.update_statistics()
.set_statistics(snapshot_id1, statistics_file1)
.remove_statistics(snapshot_id2)
# Operations are applied on commit.
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nit: add .commit() instead of the comment

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or use snapshot_id=1

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I added the commit() and kept the comment consistent with the other examples.

Comment on lines 1150 to 1151
update.set_statistics(1, statistics_file)
update.remove_statistics(2)
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nit: replace 1/2 with snapshot_id1/snapshot_id2 to show the input relation

blob_metadata: List[BlobMetadata] = Field(alias="blob-metadata")


def reject_statistics(
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nit: how about filter_statistics_by_snapshot_id?

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ndrluis commented Nov 12, 2024

Do you know which engine currently can generate puffin files? would be great to add an integration with a spark generated puffin file

@kevinjqliu As far as I know, only Trino can generate them. What kind of test would you like to have? I believe we are covering all relevant cases for this PR. If PyIceberg could generate or read puffin files, then I agree it would be useful to add tests to check compatibility between engines. However, I think it only makes sense to test puffin files during reading, as testing generation would mean verifying the implementation of something that isn’t our responsibility. In this case, it’s just a metadata update.

What do you think?

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LGTM! Thanks for working on this!

Regarding the integration tests, since we're manipulating table metadata to add/remove table stats, it would be great to verify that another source can interact with these stats. Not a hard blocker

@ndrluis ndrluis mentioned this pull request Nov 24, 2024
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